PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_002680
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LBD
Protein Properties Length: 244aa    MW: 26786.4 Da    PI: 5.1864
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_002680genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601278.9e-4071071100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkCa++Cv+apyf+++q +++f ++hk+FGasnv+kll++lp +er +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+++l++l
  DCAR_002680   7 PCGACKFLRRKCARGCVFAPYFCHDQgASHFSAIHKIFGASNVSKLLAHLPLSERGEAAVTISYEAQARVQDPIYGCVSHIFALQQQVVNLQTQLSAL 104
                  7*************************89********************************************************************99 PP

       DUF260  98 kee 100
                  ke+
  DCAR_002680 105 KEQ 107
                  987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.6596108IPR004883Lateral organ boundaries, LOB
PfamPF031955.9E-377105IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MTGTGSPCGA CKFLRRKCAR GCVFAPYFCH DQGASHFSAI HKIFGASNVS KLLAHLPLSE  60
RGEAAVTISY EAQARVQDPI YGCVSHIFAL QQQVVNLQTQ LSALKEQAAQ NFANGSGTSF  120
TSANPNDHMS SSSSYGTIPC NYSTQDAQRW SHSETASMMP QFDDLNISVK NDCCDENAYN  180
INSESSTNYH LQEANISFPS FEGVSSYSMD PIYADHMQTN NQQWSFREDV DDLQSVAFGY  240
VQY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007199390.15e-92hypothetical protein PRUPE_ppa025889mg
SwissprotQ9M2J73e-67LBD29_ARATH; LOB domain-containing protein 29
TrEMBLM5VHN06e-92M5VHN0_PRUPE; Uncharacterized protein
STRINGPOPTR_0002s04200.11e-88(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84462230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.16e-59lateral organ boundaries-domain 29